PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC164_p11
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 207aa    MW: 23584.1 Da    PI: 9.9605
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC164_p11genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.79.8e-09127167954
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  RrC164_p11 127 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 167
                 699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.294118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14119177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.45E-10120172No hitNo description
SuperFamilySSF474596.15E-15122179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-13124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-6128167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MDSDIMNMMM QHMEKLPEFY NTNASLIDHN NNTYPFLFNP NHNHSDSMTH EPRFRYGSGL  60
HANPACSSIT HDKINNMSNN NSTNMAAMRE MIFRIAMMQP IHIDPEAVKP PKRRNVRISK  120
DPQSVAARHR RERISEKIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQSLEEQTVV  180
NSGGVVMKGC GAMGTTHQMV ANAHILR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610045.11e-129PREDICTED: transcription factor HEC1-like
SwissprotQ9FHA76e-84HEC1_ARATH; Transcription factor HEC1
TrEMBLA0A0D3E2J21e-129A0A0D3E2J2_BRAOL; Uncharacterized protein
STRINGBra037128.1-P1e-124(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15592791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.13e-81bHLH family protein